JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNGB1_chr16_57877340_57976128	0/0	a0030	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0031	1251	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0032	1251	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0033	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0034	1251	1	0	0	0	1	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0035	1251	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0036	1251	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0037	1251	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0038	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0039	1251	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0040	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0041	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0042	1247	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0043	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0044	1251	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0045	1251	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0046	1251	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0047	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0048	1251	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0049	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0050	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0051	1251	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0052	1251	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB3_chr8_86569179_86748634	0/0	a0001	809	169	32	26	87	1	23	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0002	809	41	15	8	12	1	5	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/1	a0003	809	17	5	0	10	0	1	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0004	809	16	2	0	11	1	2	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0005	809	10	0	4	6	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0006	809	9	8	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	1/0	a0007	809	7	1	4	0	0	1	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0008	809	6	6	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0009	809	2	2	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0010	809	2	0	2	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0011	809	2	2	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0012	809	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0013	809	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0014	809	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0015	809	1	1	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0016	809	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0017	809	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	a0018	809	1	0	0	0	1	0	copy fasta	CNGB3	chr8	86569179	86748634
CNIH1_chr14_54418561_54446374	1/1	a0001	144	382	96	50	192	8	34	copy fasta	CNIH1	chr14	54418561	54446374
CNIH2_chr11_66273175_66289206	1/1	a0001	160	420	90	76	196	16	40	copy fasta	CNIH2	chr11	66273175	66289206
CNIH3_chr1_224611317_224745554	1/1	a0001	160	358	90	54	156	18	38	copy fasta	CNIH3	chr1	224611317	224745554
CNIH4_chr1_224351879_224384452	1/1	a0001	139	321	95	71	92	11	50	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	a0002	139	1	0	0	0	1	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	a0003	139	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	a0004	139	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNKSR1_chr1_26172491_26194884	1/1	a0001	713	274	62	67	107	10	26	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0002	713	39	6	7	17	1	8	copy fasta	CNKSR1	chr1	26172491	26194884