JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNKSR1_chr1_26172491_26194884	0/0	a0003	713	18	0	0	17	0	1	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0004	437	11	5	2	4	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0005	713	9	7	2	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0006	713	4	4	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0007	713	4	4	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0008	713	2	1	1	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0009	713	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0010	713	1	0	0	0	0	1	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0011	497	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0012	713	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0013	713	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0014	437	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0015	437	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0016	713	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0017	713	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0018	713	1	0	1	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	a0019	713	1	0	0	0	1	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR2_chrX_21369418_21659689	1/1	a0001	1034	161	40	29	67	5	18	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	a0002	1034	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	a0003	1034	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR3_chr6_154382515_154515685	1/1	a0001	555	340	89	59	142	12	36	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	a0002	555	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	a0003	555	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNMD_chr13_52698264_52744820	1/0	a0001	334	305	70	71	119	14	30	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/1	a0002	334	21	15	1	0	0	4	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	a0003	334	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	a0004	334	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	a0005	334	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	a0006	334	1	0	0	1	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNN1_chr19_11533851_11555323	1/1	a0001	297	388	93	63	172	14	44	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	a0002	297	3	0	3	0	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	a0003	297	1	1	0	0	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN2_chr19_1021608_1044065	1/1	a0001	309	387	97	68	156	14	50	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	a0002	309	2	0	2	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	a0003	309	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN3_chr1_94891957_94932110	1/1	a0001	329	419	91	71	200	18	37	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	a0002	329	4	0	3	0	0	1	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	a0003	329	2	1	1	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	a0004	329	1	0	1	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNNM1_chr10_99324356_99399330	1/1	a0001	951	305	91	49	132	5	26	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	a0002	951	10	0	7	0	3	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	a0003	951	2	0	0	2	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	a0004	951	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	a0005	951	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	a0006	951	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM2_chr10_102913294_103095222	1/1	a0001	875	253	52	52	109	10	28	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	a0002	875	13	6	3	0	2	2	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	a0003	875	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	a0004	875	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	a0005	875	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222