JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNNM3_chr2_96811268_96840382	1/1	a0001	707	330	90	70	119	16	33	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0002	707	11	1	0	10	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0003	707	5	0	0	4	0	1	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0004	707	3	0	3	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0005	707	2	0	2	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0006	707	2	0	0	2	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0007	707	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0008	707	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0009	707	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0010	707	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	a0011	707	1	0	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM4_chr2_96755902_96816874	1/1	a0001	775	265	84	55	94	12	18	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	a0002	775	2	2	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	a0003	775	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	a0004	775	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	a0005	775	1	0	1	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNOT10_chr3_32680188_32778875	1/1	a0001	744	344	80	69	145	14	34	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	a0002	744	8	6	2	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	a0003	744	1	0	0	1	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	a0004	744	1	0	1	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT11_chr2_101247886_101275316	1/1	a0001	510	373	93	66	156	18	38	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	a0002	510	2	0	0	2	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	a0003	510	1	1	0	0	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	a0004	510	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	a0005	510	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT1_chr16_58514951_58634826	1/1	a0001	2376	299	81	44	123	16	33	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0002	2376	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0003	355	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0004	2376	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0005	2376	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0006	2376	1	1	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0007	2376	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0008	2376	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0009	2376	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	a0010	211	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT2_chr12_70238433_70359993	0/0	a0000	0	51	13	7	25	1	5	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	1/1	a0001	540	229	79	53	65	9	21	copy fasta	CNOT2	chr12	70238433	70359993
CNOT3_chr19_54132762_54160681	0/1	a0001	753	219	58	40	88	10	22	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	a0002	753	1	0	0	0	0	1	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	a0003	753	1	1	0	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	a0004	753	1	1	0	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	a0005	753	1	0	0	0	0	1	copy fasta	CNOT3	chr19	54132762	54160681
CNOT4_chr7_135356795_135515102	1/1	a0001	713	248	62	48	97	9	30	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	a0002	713	104	11	17	68	2	6	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	a0003	713	4	1	3	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	a0004	713	3	0	3	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	a0005	713	1	0	1	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	a0006	713	1	0	0	0	1	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	a0007	713	1	0	0	1	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT6L_chr4_77708387_77824368	1/1	a0001	555	327	90	56	135	8	36	copy fasta	CNOT6L	chr4	77708387	77824368