JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNOT6L_chr4_77708387_77824368	0/0	a0002	555	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6_chr5_180489379_180583358	1/1	a0001	557	332	86	70	126	12	36	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	a0002	557	2	0	0	2	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT7_chr8_17219966_17251857	1/1	a0001	285	407	92	60	193	16	44	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	a0002	285	1	0	0	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT8_chr5_154853627_154881792	1/1	a0001	292	339	90	65	140	14	28	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	a0002	292	1	0	0	1	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	a0003	292	1	0	0	1	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	a0004	292	1	0	1	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT9_chr2_218563839_218602080	1/1	a0001	299	322	88	42	136	12	42	copy fasta	CNOT9	chr2	218563839	218602080
CNPPD1_chr2_219166897_219181925	0/0	a0001	410	211	62	39	86	4	20	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/1	a0002	410	144	34	24	61	8	16	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0003	410	56	0	6	41	4	5	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0004	410	6	0	2	3	0	1	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0005	410	3	0	0	3	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0006	410	3	0	2	0	0	1	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	1/0	a0007	410	2	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0008	31	1	0	0	1	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0009	410	1	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0010	410	1	0	1	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0011	410	1	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0012	410	1	0	0	0	0	1	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0013	410	1	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	a0014	410	1	0	0	1	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPY1_chr7_155496129_155551559	1/1	a0001	145	426	96	78	188	18	44	copy fasta	CNPY1	chr7	155496129	155551559
CNPY2_chr12_56304844_56320988	1/1	a0001	182	369	84	72	161	14	36	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	a0002	177	1	0	0	1	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	a0003	182	1	0	0	1	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	a0004	182	1	0	0	1	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY3_chr6_42924480_42944294	1/1	a0001	278	339	61	62	162	10	42	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	a0002	278	65	35	18	4	2	6	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	a0003	274	2	0	0	2	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	a0004	278	1	0	0	1	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	a0005	278	1	0	0	1	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY4_chr7_100114634_100130508	1/1	a0001	248	395	76	69	186	14	48	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	a0002	246	11	11	0	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	a0003	248	9	8	1	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	a0004	248	1	1	0	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNP_chr17_41961795_41982740	1/1	a0001	421	433	92	86	191	18	44	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	a0002	421	3	3	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	a0003	421	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	a0004	421	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNR1_chr6_88134864_88171347	1/1	a0001	472	397	89	74	174	16	42	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	a0002	472	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR2_chr1_23865515_23918362	0/1	a0001	360	172	65	34	45	5	22	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	1/0	a0002	360	55	14	10	21	5	4	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	a0003	360	33	0	6	18	2	7	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	a0004	360	7	7	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	a0005	360	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNRIP1_chr2_68288010_68324949	1/1	a0001	164	419	96	76	185	14	46	copy fasta	CNRIP1	chr2	68288010	68324949