JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNRIP1_chr2_68288010_68324949	0/0	a0002	164	2	0	0	2	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	a0003	164	2	0	0	0	2	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	a0004	164	1	0	0	1	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNST_chr1_246561456_246673595	0/1	a0001	725	253	59	64	85	13	31	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	1/0	a0002	725	43	13	6	18	3	2	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0003	725	12	10	2	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0004	725	6	6	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0005	725	1	0	0	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0006	725	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0007	725	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0008	725	1	0	0	0	0	1	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0009	725	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	a0010	725	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNTD1_chr17_42793861_42816587	1/1	a0001	330	260	46	46	125	12	29	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	a0002	330	38	26	1	6	0	5	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	a0003	330	5	5	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	a0004	330	1	0	1	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	a0005	175	1	0	0	1	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	a0006	330	1	1	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTFR_chr9_34546433_34594724	1/1	a0001	373	400	95	82	164	14	43	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	a0002	373	1	1	0	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	a0003	373	1	0	0	0	0	1	copy fasta	CNTFR	chr9	34546433	34594724
CNTF_chr11_58617665_58630733	1/1	a0001	200	390	77	72	183	10	46	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	a0002	200	11	11	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	a0003	200	5	0	0	5	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	a0004	200	2	0	0	0	2	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	a0005	200	1	1	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	a0006	200	1	1	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTLN_chr9_17130040_17508923	0/1	a0001	1406	73	18	16	32	1	5	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	1/0	a0002	1406	24	7	8	5	0	3	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0003	1406	23	4	0	17	0	2	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0004	1406	22	7	7	7	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0005	1406	16	1	2	10	1	2	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0006	1406	10	10	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0007	1406	9	9	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0008	1406	6	6	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0009	1406	6	6	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0010	1406	4	2	2	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0011	1406	3	3	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0012	1406	2	0	0	1	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0013	1406	2	1	1	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0014	1406	2	0	0	1	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0015	1406	2	0	2	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0016	1406	2	2	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0017	1406	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0018	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0019	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0020	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0021	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0022	1305	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923