JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNTLN_chr9_17130040_17508923	0/0	a0023	1406	1	0	0	0	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0024	1406	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0025	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0026	1406	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0027	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	a0028	1406	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTN1_chr12_40687439_41077415	0/0	a0001	1018	222	69	52	78	12	11	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	a0002	1018	5	3	2	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	a0003	1018	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	a0004	1018	1	0	0	0	0	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	a0005	1018	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN2_chr1_205038212_205083289	1/1	a0001	1040	153	68	34	26	8	15	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0002	1040	106	6	19	67	4	10	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0003	1040	80	3	15	55	0	7	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0004	1040	18	5	2	3	2	6	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0005	1040	10	9	0	0	1	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0006	1040	3	0	3	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0007	1040	2	1	0	0	1	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0008	1040	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0009	1040	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0010	1040	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0011	1040	1	0	1	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0012	1040	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0013	1040	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0014	1040	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	a0015	1040	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN3_chr3_74257568_74619659	1/1	a0001	1028	120	36	27	42	2	11	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0002	1028	24	6	2	12	1	3	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0003	1028	20	20	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0004	1028	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0005	1028	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0006	1028	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0007	1028	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0008	1028	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0009	1028	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0010	1028	1	0	1	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0011	1028	1	0	0	0	1	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	a0012	1028	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN4_chr3_2093866_3062959	0/0	a0001	1026	102	50	24	11	2	15	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0002	1026	4	4	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0003	1026	3	3	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0004	1026	2	0	2	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0005	1026	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0006	1026	1	0	0	0	0	1	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0007	1026	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0008	1026	1	0	0	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	a0009	1026	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN5_chr11_99015949_100363885	0/0	a0001	1100	27	10	11	3	0	3	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0002	1100	9	3	5	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0003	1100	9	4	2	2	0	1	copy fasta	CNTN5	chr11	99015949	100363885