JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNTN5_chr11_99015949_100363885	0/0	a0004	1100	5	2	1	2	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0005	1100	5	4	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0006	1100	5	2	2	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0007	1100	1	0	0	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0008	1100	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0009	1100	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0010	1100	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0011	1100	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	a0012	1100	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN6_chr3_1088024_1409217	1/1	a0001	1028	220	69	54	61	8	26	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	a0002	1028	5	5	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	a0003	1028	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	a0004	1028	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	a0005	1028	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	a0006	1028	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	a0007	1028	1	0	0	1	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTNAP1_chr17_42677531_42704993	1/1	a0001	1384	338	75	64	144	10	43	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0002	1384	20	16	4	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0003	1384	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0004	1384	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0005	1384	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0006	1384	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0007	1384	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	a0008	1384	1	0	0	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP2_chr7_146111801_148425998	0/0	a0001	1331	35	32	2	0	0	1	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	a0002	1331	2	2	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	a0003	1331	1	0	0	0	0	1	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	a0004	1331	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	a0005	1331	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP3B_chr9_41885536_42134426	0/0	a0001	675	25	2	9	8	2	4	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/1	a0002	1288	24	2	8	6	1	6	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0003	1288	10	3	1	3	1	2	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0004	1288	5	0	1	1	1	2	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0005	1288	4	2	0	0	1	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0006	675	4	1	0	2	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0007	1288	3	3	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0008	1288	3	3	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0009	1288	3	0	2	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0010	675	2	0	0	0	1	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0011	1288	2	0	0	2	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0012	1288	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0013	675	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0014	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0015	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0016	1288	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0017	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0018	1288	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0019	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	1/0	a0020	1288	1	0	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0021	1288	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426