JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNTNAP3B_chr9_41885536_42134426	0/0	a0022	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0023	1288	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0024	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0025	1288	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0026	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0027	1270	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0028	1288	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0029	675	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0030	1288	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0031	1288	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0032	1288	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0033	1288	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	a0034	675	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3_chr9_39059710_39293167	0/0	a0001	1288	1	1	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	0/0	a0002	1288	1	1	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	1/0	a0003	1288	1	0	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	0/1	a0004	1288	1	0	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP4_chr16_76272401_76565757	0/0	a0001	1308	120	20	25	56	4	15	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0002	1308	68	19	11	29	0	9	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	1/1	a0003	1308	33	24	5	2	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0004	1308	14	7	2	2	1	2	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0005	1308	8	0	1	6	1	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0006	1308	5	3	0	2	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0007	1308	3	2	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0008	1308	2	0	0	1	0	1	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0009	1308	2	2	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0010	1308	2	0	0	0	0	2	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0011	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0012	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0013	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0014	1308	1	0	0	0	0	1	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0015	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0016	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0017	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0018	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0019	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0020	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0021	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0022	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0023	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0024	1308	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0025	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0026	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	a0027	1308	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP5_chr2_124020287_124926219	1/1	a0001	1307	58	42	7	3	0	4	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	a0002	1307	2	2	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	a0003	1307	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	a0004	1307	1	0	0	1	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	a0005	1307	1	0	1	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	a0006	1307	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219