JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNTRL_chr9_121069955_121182610	1/1	a0001	2325	107	47	18	37	3	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0002	2325	96	11	19	50	5	11	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0003	2325	85	9	18	44	3	11	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0004	2325	7	7	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0005	2325	5	0	0	5	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0006	2325	3	0	1	0	0	2	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0007	2325	3	0	3	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0008	2325	3	3	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0009	2325	2	0	0	0	2	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0010	2325	2	2	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0011	2325	2	0	2	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0012	2325	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0013	2325	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0014	2325	1	0	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0015	2325	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0016	2325	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0017	2325	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0018	2325	1	0	0	0	1	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0019	2325	1	0	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0020	2325	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0021	2325	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0022	2325	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0023	2325	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0024	2325	1	0	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0025	2325	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	a0026	2325	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTROB_chr17_7927206_7954920	0/1	a0001	903	247	47	40	119	11	29	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	1/0	a0002	903	128	37	24	52	6	8	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0003	903	8	6	2	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0004	903	4	0	0	3	0	1	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0005	903	3	3	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0006	903	2	0	2	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0007	903	2	0	1	0	1	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0008	903	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0009	903	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0010	903	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0011	903	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0012	903	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0013	903	1	0	0	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0014	903	1	0	1	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	a0015	903	1	0	0	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
COA1_chr7_43634257_43734523	1/1	a0001	146	383	84	80	167	18	32	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	a0002	146	1	0	0	1	0	0	copy fasta	COA1	chr7	43634257	43734523
COA3_chr17_42792625_42803704	1/1	a0001	106	309	82	51	132	8	34	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	a0002	106	1	0	1	0	0	0	copy fasta	COA3	chr17	42792625	42803704
COA4_chr11_73867667_73881846	1/1	a0001	87	390	91	75	166	12	44	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	a0002	87	2	2	0	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	a0003	87	1	1	0	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	a0004	87	1	0	1	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA5_chr2_98594314_98613512	1/1	a0001	74	419	86	79	194	16	42	copy fasta	COA5	chr2	98594314	98613512