JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COA5_chr2_98594314_98613512	0/0	a0002	74	1	0	1	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA6_chr1_234368456_234390080	0/0	a0001	155	236	85	47	80	7	17	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	1/1	a0002	155	162	9	26	95	7	23	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	a0003	155	7	0	1	6	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	a0004	155	1	0	0	1	0	0	copy fasta	COA6	chr1	234368456	234390080
COA7_chr1_52679449_52703347	0/0	a0001	231	353	82	47	184	11	29	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	a0002	231	61	16	17	2	7	19	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	a0003	231	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	a0004	231	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA8_chr14_103557960_103595896	1/1	a0001	193	263	42	47	132	10	30	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	a0002	193	93	23	20	30	8	12	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	a0003	193	12	12	0	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	a0004	193	11	10	1	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	a0005	193	3	1	2	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COASY_chr17_42557148_42571277	0/0	a0001	564	209	35	37	99	7	31	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	1/1	a0002	564	180	54	33	66	9	16	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	a0003	564	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	a0004	564	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	a0005	564	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	a0006	564	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	a0007	564	1	0	0	0	0	1	copy fasta	COASY	chr17	42557148	42571277
COBLL1_chr2_164675188_164846823	1/0	a0001	1128	151	64	34	29	7	16	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/1	a0002	1128	20	9	6	0	2	2	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0003	1128	9	1	4	1	1	2	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0004	1128	7	7	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0005	1128	5	0	0	5	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0006	1128	2	0	0	2	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0007	1128	2	1	0	0	1	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0008	1128	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0009	1128	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0010	1128	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0011	1128	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0012	1128	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0013	1128	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0014	1128	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0015	1128	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0016	1128	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0017	1128	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0018	1128	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0019	1128	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0020	1128	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0021	1128	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	a0022	1128	1	0	0	0	1	0	copy fasta	COBLL1	chr2	164675188	164846823
COBL_chr7_51011212_51321809	0/0	a0001	1261	46	13	4	25	0	4	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0002	1260	40	12	10	17	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/1	a0003	1261	38	12	7	8	3	7	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0004	1260	18	7	3	3	3	2	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0005	1260	18	1	1	15	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0006	1260	11	10	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0007	1260	7	2	0	2	0	3	copy fasta	COBL	chr7	51011212	51321809