JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COBL_chr7_51011212_51321809	0/0	a0008	1261	7	3	1	3	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0009	1261	5	0	0	5	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0010	1260	4	4	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0011	1261	4	0	0	3	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0012	1261	4	4	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0013	1261	3	0	3	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	1/0	a0014	1261	3	0	2	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0015	1260	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0016	1261	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0017	1261	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0018	1261	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0019	1261	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0020	1261	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0021	1260	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0022	1260	1	0	0	0	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0023	1260	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0024	1260	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0025	1261	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0026	1261	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0027	1261	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0028	1261	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0029	1261	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0030	1261	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0031	1261	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0032	1261	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0033	1261	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	a0034	1261	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COCH_chr14_30869559_30895618	1/0	a0001	550	291	70	30	158	6	26	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/1	a0002	550	175	20	50	77	10	17	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0003	550	2	0	2	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0004	550	2	2	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0005	550	2	2	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0006	550	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0007	550	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0008	550	1	0	0	0	0	1	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0009	550	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0010	550	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	a0011	550	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COG1_chr17_73188055_73213507	0/0	a0001	980	228	51	38	109	6	24	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	1/1	a0002	980	180	45	30	79	2	22	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0003	980	11	3	5	0	1	2	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0004	980	3	0	3	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0005	980	2	0	1	0	1	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0006	980	1	0	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0007	980	1	0	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0008	980	1	1	0	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	a0009	980	1	0	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG2_chr1_230637481_230698982	1/0	a0001	738	320	70	55	149	14	31	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0002	738	43	3	9	21	4	6	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/1	a0003	738	30	11	2	14	0	2	copy fasta	COG2	chr1	230637481	230698982