JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COG2_chr1_230637481_230698982	0/0	a0004	738	5	4	1	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0005	738	2	0	0	2	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0006	738	1	0	0	0	0	1	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0007	738	1	0	1	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0008	738	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0009	738	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0010	738	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	a0011	738	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG3_chr13_45459939_45541701	0/1	a0001	828	210	37	47	100	4	21	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	a0002	828	118	41	19	42	4	12	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	a0003	828	8	8	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	a0004	828	2	2	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	a0005	828	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	a0006	828	1	0	0	0	0	1	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	a0007	828	1	0	0	1	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	1/0	a0008	828	1	0	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG4_chr16_70475571_70528554	0/1	a0001	789	336	74	61	149	14	37	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	1/0	a0002	789	13	1	9	0	1	1	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	a0003	789	1	0	0	0	0	1	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	a0004	789	1	0	0	1	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	a0005	789	1	0	0	0	1	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	a0006	789	1	1	0	0	0	0	copy fasta	COG4	chr16	70475571	70528554
COG4_chr16_70475571_70528554	0/0	a0007	789	1	0	0	0	0	1	copy fasta	COG4	chr16	70475571	70528554
COG6_chr13_39650662_39757628	1/1	a0001	657	215	39	39	99	11	25	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0002	657	139	39	24	59	7	10	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0003	657	6	5	1	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0004	657	4	1	0	0	0	3	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0005	657	3	3	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0006	657	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0007	657	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG6_chr13_39650662_39757628	0/0	a0008	657	1	1	0	0	0	0	copy fasta	COG6	chr13	39650662	39757628
COG7_chr16_23383493_23458189	1/1	a0001	770	227	59	37	88	10	31	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0002	770	39	16	14	4	0	5	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0003	770	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0004	770	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0005	770	1	1	0	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0006	770	1	0	0	1	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0007	770	1	0	1	0	0	0	copy fasta	COG7	chr16	23383493	23458189
COG7_chr16_23383493_23458189	0/0	a0008	770	1	0	0	1	0	0	copy fasta	COG7	chr16	23383493	23458189
COG8_chr16_69321428_69344564	1/1	a0001	612	346	86	71	128	18	41	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0002	612	5	5	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0003	612	2	2	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0004	612	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0005	612	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0006	612	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0007	612	1	0	0	0	0	1	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0008	156	1	0	0	1	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0009	612	1	1	0	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COG8_chr16_69321428_69344564	0/0	a0010	612	1	0	1	0	0	0	copy fasta	COG8	chr16	69321428	69344564
COIL_chr17_56933199_56966050	1/0	a0001	576	377	90	57	174	12	43	copy fasta	COIL	chr17	56933199	56966050