JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COIL_chr17_56933199_56966050	0/1	a0002	576	31	1	23	2	0	4	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	a0003	576	5	4	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	a0004	576	1	0	1	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	a0005	576	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	a0006	576	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	a0007	576	1	0	0	0	0	1	copy fasta	COIL	chr17	56933199	56966050
COIL_chr17_56933199_56966050	0/0	a0008	576	1	1	0	0	0	0	copy fasta	COIL	chr17	56933199	56966050
COL10A1_chr6_116113909_116131132	1/1	a0001	680	243	29	44	130	8	30	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0002	680	99	20	11	57	3	8	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0003	680	66	44	17	0	1	4	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0004	680	3	0	0	0	0	3	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0005	680	2	2	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0006	680	1	0	0	0	1	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0007	680	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0008	680	1	0	0	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0009	680	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0010	680	1	1	0	0	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0011	680	1	0	0	1	0	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0012	680	1	0	0	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0013	680	1	0	0	0	1	0	copy fasta	COL10A1	chr6	116113909	116131132
COL10A1_chr6_116113909_116131132	0/0	a0014	680	1	0	0	0	0	1	copy fasta	COL10A1	chr6	116113909	116131132
COL11A1_chr1_102871473_103113522	0/0	a0001	1806	70	56	3	6	4	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/1	a0002	1806	48	3	19	12	4	9	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	1/0	a0003	1806	26	12	3	5	0	5	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0004	1806	16	7	3	5	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0005	1806	4	3	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0006	1806	4	4	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0007	1806	3	0	0	3	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0008	1806	2	2	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0009	1651	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0010	1806	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0011	1806	1	0	0	0	0	1	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0012	1806	1	0	0	1	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0013	1806	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0014	1806	1	0	0	0	1	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0015	1806	1	0	0	1	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0016	1806	1	0	0	1	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0017	1806	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0018	1806	1	0	1	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A1_chr1_102871473_103113522	0/0	a0019	1806	1	1	0	0	0	0	copy fasta	COL11A1	chr1	102871473	103113522
COL11A2_chr6_33157694_33197467	0/1	a0001	1736	199	50	44	74	7	23	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0002	1736	84	27	19	20	6	12	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0003	1736	41	0	4	25	5	7	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0004	1736	18	4	0	13	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0005	1736	6	0	0	6	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0006	1736	4	0	4	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0007	1736	3	3	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0008	1736	3	0	0	3	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0009	1736	2	2	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0010	1736	2	2	0	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467