JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL11A2_chr6_33157694_33197467	0/0	a0011	1736	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0012	1736	1	0	0	1	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0013	1736	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0014	1736	1	0	1	0	0	0	copy fasta	COL11A2	chr6	33157694	33197467
COL11A2_chr6_33157694_33197467	0/0	a0015	1736	1	0	0	0	0	1	copy fasta	COL11A2	chr6	33157694	33197467
COL12A1_chr6_75079326_75211053	0/0	a0001	3063	83	16	10	44	2	11	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	1/0	a0002	3063	41	5	6	25	0	4	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0003	3063	34	15	6	7	1	5	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0004	3063	9	3	1	3	0	2	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0005	3063	6	6	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0006	3063	4	4	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0007	3063	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0008	3063	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0009	3063	2	0	2	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0010	3063	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0011	3063	2	2	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0012	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0013	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/1	a0014	3063	1	0	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0015	3063	1	0	0	0	1	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0016	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0017	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0018	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0019	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0020	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0021	3063	1	0	0	0	0	1	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0022	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0023	3063	1	0	0	0	0	1	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0024	3063	1	0	1	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0025	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0026	3063	1	0	0	1	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0027	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0028	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0029	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL12A1_chr6_75079326_75211053	0/0	a0030	3063	1	1	0	0	0	0	copy fasta	COL12A1	chr6	75079326	75211053
COL13A1_chr10_69796906_69964144	1/1	a0001	728	292	65	58	115	12	40	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0002	728	15	15	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0003	728	5	2	3	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0004	728	3	0	0	3	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0005	728	3	0	0	3	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0006	728	1	0	0	1	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0007	728	1	0	0	0	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0008	728	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0009	728	1	0	0	0	0	1	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0010	728	1	0	1	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL13A1_chr10_69796906_69964144	0/0	a0011	728	1	1	0	0	0	0	copy fasta	COL13A1	chr10	69796906	69964144
COL14A1_chr8_120120102_120378573	0/1	a0001	1796	114	42	17	36	5	13	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	1/0	a0002	1796	66	18	11	29	1	6	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0003	1796	14	5	1	6	0	2	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0004	1796	8	5	2	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573