JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL14A1_chr8_120120102_120378573	0/0	a0005	1796	4	3	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0006	1796	2	2	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0007	1796	2	0	0	2	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0008	1796	1	0	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0009	1796	1	0	1	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0010	1796	1	1	0	0	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0011	1796	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0012	1796	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0013	1796	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0014	1796	1	0	0	0	0	1	copy fasta	COL14A1	chr8	120120102	120378573
COL14A1_chr8_120120102_120378573	0/0	a0015	1796	1	0	0	1	0	0	copy fasta	COL14A1	chr8	120120102	120378573
COL15A1_chr9_98938907_99075787	1/1	a0001	1388	53	10	12	15	2	12	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0002	1388	52	13	5	29	1	4	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0003	1388	30	0	3	20	2	5	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0004	1388	15	2	5	6	0	2	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0005	1388	13	0	5	5	0	3	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0006	1388	13	6	2	4	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0007	1388	12	5	4	0	2	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0008	1388	11	0	6	4	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0009	1388	8	0	0	8	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0010	1388	8	5	2	0	1	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0011	1388	6	5	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0012	1388	6	3	0	0	2	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0013	1388	6	1	1	4	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0014	1388	6	0	2	4	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0015	1388	6	0	0	5	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0016	1388	5	0	2	3	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0017	1388	4	4	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0018	1388	3	0	0	3	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0019	1388	3	3	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0020	1388	3	3	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0021	1388	2	0	0	1	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0022	1388	2	2	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0023	1388	2	2	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0024	1388	2	2	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0025	1388	2	0	2	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0026	1388	2	0	0	2	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0027	1388	2	0	0	2	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0028	1388	2	2	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0029	1388	2	0	0	2	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0030	1388	2	2	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0031	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0032	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0033	1388	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0034	1388	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0035	1388	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0036	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0037	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0038	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0039	1388	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787