JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL15A1_chr9_98938907_99075787	0/0	a0040	1388	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0041	1388	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0042	1388	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0043	1388	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0044	402	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0045	1388	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0046	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0047	1388	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0048	1388	1	0	0	1	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0049	1388	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0050	1388	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0051	1388	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0052	1388	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0053	1388	1	0	0	0	0	1	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0054	1388	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0055	1388	1	0	1	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0056	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL15A1_chr9_98938907_99075787	0/0	a0057	1388	1	1	0	0	0	0	copy fasta	COL15A1	chr9	98938907	99075787
COL16A1_chr1_31647263_31709017	1/0	a0001	1604	175	53	26	69	7	19	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/1	a0002	1604	109	23	22	35	7	21	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0003	1604	14	0	9	5	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0004	1604	5	5	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0005	1604	4	3	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0006	1604	3	2	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0007	1604	3	2	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0008	1604	3	0	0	3	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0009	1604	2	1	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0010	1604	2	1	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0011	1604	2	0	0	2	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0012	1604	2	1	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0013	1604	2	0	0	2	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0014	1604	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0015	1604	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0016	1604	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0017	1604	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0018	1604	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0019	1604	1	0	0	0	0	1	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0020	1604	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0021	1604	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0022	1604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0023	1604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0024	1604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0025	1604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0026	1604	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0027	1604	1	0	1	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0028	1604	1	1	0	0	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL16A1_chr1_31647263_31709017	0/0	a0029	1604	1	0	0	1	0	0	copy fasta	COL16A1	chr1	31647263	31709017
COL17A1_chr10_104026286_104090880	0/1	a0001	1497	107	14	22	57	3	10	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	1/0	a0002	1497	63	27	2	30	0	3	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0003	1497	40	5	10	14	2	9	copy fasta	COL17A1	chr10	104026286	104090880