Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTS18_chr16_77277128_77440034	0/0	a0041	1221	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS19_chr5_129455298_129743683	0/1	a0001	1213	152	59	26	45	0	21	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0002	1215	57	13	6	32	0	6	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0003	1213	7	1	5	0	0	1	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0004	1213	3	3	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0005	1213	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0006	1215	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0007	1213	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0008	1213	1	0	1	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0009	1213	1	0	0	1	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	1/0	a0010	1213	1	0	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	a0011	1209	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS1_chr21_26830755_26850409	0/1	a0001	967	277	80	48	101	11	36	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	1/0	a0002	967	149	10	27	97	7	7	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0003	967	38	0	7	25	0	6	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0004	967	3	3	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0005	967	2	0	0	2	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0006	967	1	0	0	0	0	1	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0007	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0008	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0009	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0010	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0011	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0012	967	1	1	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0013	967	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0014	967	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0015	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	a0016	967	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS20_chr12_43348866_43557203	1/1	a0001	1910	255	68	47	99	10	29	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0002	1910	22	2	0	19	0	1	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0003	1910	4	4	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0004	1910	4	3	1	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0005	1910	3	0	0	3	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0006	1910	3	0	0	3	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0007	1910	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0008	1910	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0009	1910	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0010	1910	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0011	1910	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0012	1910	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0013	1910	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0014	1910	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0015	1910	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0016	1910	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0017	1910	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	a0018	1910	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS2_chr5_179105853_179350461	1/0	a0001	1211	71	30	15	14	3	8	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0002	1211	63	22	6	26	1	8	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0003	1212	25	8	3	12	0	2	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/1	a0004	1212	22	6	7	6	0	2	copy fasta	ADAMTS2	chr5	179105853	179350461