JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL18A1_chr21_45400165_45518720	0/0	a0024	1336	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0025	1339	1	0	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0026	1333	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0027	901	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0028	1336	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0029	1336	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0030	1336	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0031	1336	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0032	1333	1	0	0	0	1	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0033	1336	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0034	1336	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0035	1336	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0036	1339	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0037	1336	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL19A1_chr6_69861556_70217468	1/1	a0001	1142	96	22	24	35	6	7	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0002	1142	72	41	8	19	0	4	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0003	1142	3	3	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0004	1142	2	2	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0005	1142	2	0	0	0	0	2	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0006	1142	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0007	1142	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0008	1142	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0009	1142	1	0	0	0	0	1	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0010	1142	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0011	98	1	1	0	0	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL19A1_chr6_69861556_70217468	0/0	a0012	1142	1	0	0	1	0	0	copy fasta	COL19A1	chr6	69861556	70217468
COL1A1_chr17_50179101_50206631	1/1	a0001	1464	432	91	79	205	10	45	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0002	1464	5	4	1	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0003	1464	1	0	0	0	0	1	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0004	1464	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0005	1464	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0006	1464	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0007	1464	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0008	1464	1	0	0	0	1	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0009	1464	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0010	1464	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0011	1464	1	0	0	1	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0012	1464	1	1	0	0	0	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A1_chr17_50179101_50206631	0/0	a0013	1464	1	0	0	0	1	0	copy fasta	COL1A1	chr17	50179101	50206631
COL1A2_chr7_94389895_94436227	0/1	a0001	1366	364	82	62	183	5	31	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	1/0	a0002	1366	58	8	9	15	8	17	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0003	1366	3	2	1	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0004	1366	2	0	0	2	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0005	1366	1	0	0	0	1	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0006	829	1	0	0	0	0	1	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0007	1366	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0008	1366	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0009	1281	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0010	1366	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0011	1366	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227