JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL1A2_chr7_94389895_94436227	0/0	a0012	1366	1	0	0	0	0	1	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0013	1366	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0014	1366	1	0	0	1	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL1A2_chr7_94389895_94436227	0/0	a0015	1366	1	1	0	0	0	0	copy fasta	COL1A2	chr7	94389895	94436227
COL20A1_chr20_63288186_63339806	1/1	a0001	1284	208	44	50	82	6	24	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0002	1284	27	20	6	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0003	1284	12	1	4	2	1	4	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0004	1284	6	6	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0005	1284	4	1	1	0	1	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0006	1284	3	0	3	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0007	1284	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0008	1284	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0009	1284	2	0	0	2	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0010	1284	2	2	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0011	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0012	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0013	1284	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0014	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0015	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0016	1284	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0017	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0018	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0019	1284	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0020	1284	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0021	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0022	1284	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0023	1284	1	0	0	0	0	1	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0024	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0025	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0026	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0027	1284	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0028	1284	1	0	1	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0029	1284	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0030	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0031	1284	1	1	0	0	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL20A1_chr20_63288186_63339806	0/0	a0032	1284	1	0	0	1	0	0	copy fasta	COL20A1	chr20	63288186	63339806
COL21A1_chr6_56051590_56252580	1/1	a0001	957	215	43	50	79	9	32	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0002	957	14	2	1	7	0	4	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0003	957	13	0	5	6	1	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0004	957	9	9	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0005	957	3	1	1	0	0	1	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0006	957	2	0	2	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0007	957	2	2	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0008	957	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0009	957	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0010	957	1	0	0	1	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0011	957	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0012	957	1	0	1	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL21A1_chr6_56051590_56252580	0/0	a0013	957	1	1	0	0	0	0	copy fasta	COL21A1	chr6	56051590	56252580
COL22A1_chr8_138583235_138919041	0/1	a0001	1626	83	46	14	10	2	10	copy fasta	COL22A1	chr8	138583235	138919041