JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL22A1_chr8_138583235_138919041	0/0	a0002	1626	45	21	8	5	1	10	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	1/0	a0003	1626	9	4	3	1	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0004	1626	5	2	2	0	1	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0005	1626	4	0	4	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0006	1626	2	2	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0007	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0008	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0009	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0010	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0011	1626	1	0	0	0	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0012	1626	1	0	1	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0013	1626	1	0	0	0	0	1	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0014	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0015	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL22A1_chr8_138583235_138919041	0/0	a0016	1626	1	1	0	0	0	0	copy fasta	COL22A1	chr8	138583235	138919041
COL23A1_chr5_178232618_178595393	0/0	a0001	540	105	32	16	37	3	17	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0002	540	82	33	14	22	2	11	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0003	540	22	12	7	2	0	1	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0004	540	10	6	1	0	1	2	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0005	540	9	2	1	6	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0006	540	1	0	0	0	0	1	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0007	540	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0008	540	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0009	540	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0010	540	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0011	540	1	1	0	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0012	540	1	0	0	1	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL23A1_chr5_178232618_178595393	0/0	a0013	501	1	0	1	0	0	0	copy fasta	COL23A1	chr5	178232618	178595393
COL24A1_chr1_85724233_86161772	0/1	a0001	1714	45	7	12	20	2	3	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0002	1714	23	9	6	3	3	2	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	1/0	a0003	1714	22	5	3	8	1	4	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0004	1714	20	7	6	7	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0005	1714	20	1	3	12	0	4	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0006	1714	12	5	1	5	0	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0007	1714	11	7	2	0	1	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0008	1714	10	0	0	8	1	1	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0009	1714	8	7	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0010	1714	6	0	0	6	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0011	1714	4	0	0	4	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0012	1714	4	0	1	3	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0013	1714	3	2	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0014	1714	3	3	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0015	1714	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0016	1714	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0017	1714	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0018	1714	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0019	1714	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0020	1714	2	0	1	0	1	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0021	1714	2	0	1	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0022	1714	2	1	0	0	1	0	copy fasta	COL24A1	chr1	85724233	86161772