JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL24A1_chr1_85724233_86161772	0/0	a0023	1714	2	2	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0024	1714	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0025	1714	2	0	0	2	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0026	1714	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0027	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0028	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0029	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0030	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0031	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0032	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0033	1714	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0034	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0035	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0036	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0037	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0038	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0039	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0040	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0041	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0042	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0043	1714	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0044	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0045	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0046	1714	1	0	1	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0047	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0048	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0049	1714	1	1	0	0	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL24A1_chr1_85724233_86161772	0/0	a0050	1714	1	0	0	1	0	0	copy fasta	COL24A1	chr1	85724233	86161772
COL25A1_chr4_108803725_109307658	0/0	a0001	654	128	63	27	22	4	12	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	a0002	654	1	1	0	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL25A1_chr4_108803725_109307658	0/0	a0003	654	1	0	1	0	0	0	copy fasta	COL25A1	chr4	108803725	109307658
COL26A1_chr7_101357875_101564024	1/1	a0001	441	101	30	24	30	5	10	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	a0002	441	62	27	9	16	5	5	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	a0003	441	6	6	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	a0004	441	2	0	2	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	a0005	441	1	0	1	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	a0006	441	1	0	0	0	0	1	copy fasta	COL26A1	chr7	101357875	101564024
COL26A1_chr7_101357875_101564024	0/0	a0007	441	1	1	0	0	0	0	copy fasta	COL26A1	chr7	101357875	101564024
COL27A1_chr9_114150537_114317511	1/0	a0001	1860	60	11	18	16	7	7	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0002	1860	43	10	10	15	1	7	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0003	1860	25	0	4	15	0	6	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/1	a0004	1860	23	1	3	14	1	3	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0005	1860	17	11	1	0	2	3	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0006	1860	14	0	2	12	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0007	1860	12	0	1	10	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0008	1860	9	3	4	0	1	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0009	1860	9	9	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0010	1860	9	2	3	4	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0011	1860	8	3	2	2	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0012	1860	6	3	3	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511