JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL27A1_chr9_114150537_114317511	0/0	a0013	1860	5	0	3	0	2	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0014	1860	5	3	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0015	1860	4	0	1	3	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0016	1860	4	0	0	4	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0017	1860	3	1	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0018	1860	3	3	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0019	1860	2	0	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0020	1860	2	0	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0021	1860	2	2	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0022	1860	2	0	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0023	1860	2	0	0	2	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0024	1860	2	0	2	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0025	1860	2	2	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0026	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0027	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0028	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0029	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0030	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0031	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0032	1860	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0033	1860	1	0	1	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0034	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0035	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0036	1860	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0037	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0038	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0039	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0040	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0041	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0042	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0043	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0044	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0045	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0046	1860	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0047	1860	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0048	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0049	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0050	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0051	1860	1	0	0	0	0	1	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0052	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0053	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0054	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0055	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0056	1860	1	0	0	1	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0057	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0058	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0059	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL27A1_chr9_114150537_114317511	0/0	a0060	1860	1	1	0	0	0	0	copy fasta	COL27A1	chr9	114150537	114317511
COL28A1_chr7_7352875_7540873	0/1	a0001	1125	81	17	15	24	10	14	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0002	1125	33	20	5	3	4	1	copy fasta	COL28A1	chr7	7352875	7540873