JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL3A1_chr2_188969373_189017746	0/0	a0002	1466	88	9	17	45	6	11	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0003	1466	16	0	0	16	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0004	1466	2	0	2	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0005	1466	2	0	0	2	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0006	1466	2	0	0	2	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0007	1466	2	0	0	0	0	2	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0008	571	1	0	1	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0009	1466	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	1/0	a0010	1466	1	0	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0011	1466	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0012	1466	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	a0013	1466	1	1	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL4A1_chr13_110143963_110312157	0/0	a0001	1669	123	22	23	58	3	17	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	1/1	a0002	1669	112	42	19	36	5	8	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0003	1669	57	19	15	15	3	5	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0004	1669	43	8	8	20	2	5	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0005	1669	2	0	0	1	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0006	1669	2	0	0	2	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0007	1669	1	1	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0008	1669	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0009	1669	1	0	0	0	1	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0010	1669	1	0	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	a0011	1669	1	0	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A2_chr13_110302284_110518209	1/0	a0001	1712	193	25	28	110	8	21	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0002	1712	61	28	6	15	4	8	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0003	1712	49	23	17	2	1	6	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0004	1712	23	0	3	11	2	7	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0005	1712	10	0	8	2	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0006	1712	5	0	0	5	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0007	1712	4	4	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0008	1712	3	0	2	0	1	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0009	1712	2	2	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0010	1712	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0011	1712	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0012	1712	2	0	0	0	0	2	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0013	1712	2	0	2	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0014	1712	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/1	a0015	1712	1	0	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0016	1712	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0017	1712	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0018	1712	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0019	1712	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0020	1712	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0021	1712	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0022	1712	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0023	1712	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0024	1712	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0025	1712	1	1	0	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0026	1712	1	0	1	0	0	0	copy fasta	COL4A2	chr13	110302284	110518209
COL4A2_chr13_110302284_110518209	0/0	a0027	1712	1	0	0	1	0	0	copy fasta	COL4A2	chr13	110302284	110518209