JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL4A3_chr2_227159624_227319792	0/0	a0001	1670	90	8	16	50	2	14	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	1/0	a0002	1670	42	31	2	7	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0003	1670	42	12	5	18	2	5	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0004	1670	25	1	8	15	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0005	1670	22	2	7	8	2	3	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0006	1670	20	15	2	1	0	2	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0007	1670	19	1	1	15	0	2	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0008	1670	13	0	3	5	1	4	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0009	1670	13	0	2	7	1	3	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/1	a0010	1670	9	1	2	4	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0011	1670	9	0	4	4	1	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0012	1670	5	4	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0013	1670	4	0	0	4	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0014	1670	3	1	1	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0015	1670	2	0	0	2	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0016	1670	2	0	1	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0017	1670	2	0	0	1	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0018	1670	2	2	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0019	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0020	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0021	1670	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0022	1655	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0023	1670	1	0	0	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0024	1670	1	0	0	0	0	1	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0025	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0026	1670	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0027	1670	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0028	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0029	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0030	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0031	1670	1	0	0	0	1	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0032	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0033	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0034	1670	1	0	0	1	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0035	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0036	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0037	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A3_chr2_227159624_227319792	0/0	a0038	1670	1	1	0	0	0	0	copy fasta	COL4A3	chr2	227159624	227319792
COL4A4_chr2_226997714_227169205	1/0	a0001	1690	80	16	14	39	3	7	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0002	1690	63	6	14	26	5	12	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/1	a0003	1690	30	2	4	15	1	7	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0004	1690	15	7	3	5	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0005	1690	9	1	1	4	1	2	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0006	1690	9	8	0	0	0	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0007	1690	8	8	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0008	1690	6	6	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0009	1690	5	0	3	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0010	1690	5	4	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0011	1690	4	4	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0012	1690	4	3	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205