JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL4A4_chr2_226997714_227169205	0/0	a0013	1690	3	3	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0014	1690	3	0	0	3	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0015	1690	3	1	1	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0016	1690	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0017	1690	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0018	1690	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0019	1690	2	0	0	2	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0020	1690	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0021	1690	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0022	1690	2	2	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0023	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0024	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0025	1690	1	0	0	0	1	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0026	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0027	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0028	1690	1	0	0	0	1	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0029	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0030	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0031	1690	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0032	1690	1	0	0	0	0	1	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0033	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0034	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0035	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0036	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0037	1690	1	0	0	1	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0038	1690	1	0	1	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0039	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0040	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0041	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0042	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0043	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0044	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A4_chr2_226997714_227169205	0/0	a0045	1690	1	1	0	0	0	0	copy fasta	COL4A4	chr2	226997714	227169205
COL4A5_chrX_108434838_108702545	1/1	a0001	1691	197	43	36	87	9	20	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0002	1691	53	26	2	23	0	2	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0003	1691	5	0	0	5	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0004	1691	3	0	0	3	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0005	1691	2	0	0	2	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0006	472	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0007	1691	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0008	1691	1	1	0	0	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0009	1691	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0010	1691	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0011	1691	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0012	1691	1	0	0	0	0	1	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0013	1083	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A5_chrX_108434838_108702545	0/0	a0014	156	1	0	0	1	0	0	copy fasta	COL4A5	chrX	108434838	108702545
COL4A6_chrX_108150614_108443422	1/0	a0001	1690	117	25	16	61	3	11	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/1	a0002	1690	91	20	19	32	6	13	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0003	1690	9	8	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422