JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL4A6_chrX_108150614_108443422	0/0	a0004	1690	3	3	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0005	1690	3	3	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0006	1690	2	0	0	2	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0007	1690	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0008	1690	1	0	0	0	0	1	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0009	1690	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0010	1319	1	0	0	1	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0011	1690	1	0	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0012	1690	1	0	1	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0013	1690	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0014	1690	1	1	0	0	0	0	copy fasta	COL4A6	chrX	108150614	108443422
COL4A6_chrX_108150614_108443422	0/0	a0015	1690	1	0	0	0	0	1	copy fasta	COL4A6	chrX	108150614	108443422
COL5A1_chr9_134636803_134849843	1/1	a0001	1838	243	87	50	71	13	20	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0002	1838	8	0	0	7	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0003	1838	6	1	3	0	1	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0004	1838	3	0	0	3	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0005	1838	2	0	0	2	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0006	1838	2	0	2	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0007	1838	1	0	0	0	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0008	1838	1	0	0	1	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0009	1838	1	0	0	0	0	1	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0010	1838	1	0	1	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0011	1838	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0012	1838	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0013	1838	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A1_chr9_134636803_134849843	0/0	a0014	1838	1	1	0	0	0	0	copy fasta	COL5A1	chr9	134636803	134849843
COL5A2_chr2_189026898_189184761	1/1	a0001	1499	228	64	31	93	9	29	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0002	1499	3	0	1	1	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0003	1499	2	0	2	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0004	1499	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0005	1499	2	0	0	2	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0006	1499	2	0	1	0	1	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0007	1499	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0008	1499	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0009	1499	1	0	1	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0010	1499	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0011	1499	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0012	1499	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0013	1499	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0014	1499	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	a0015	1499	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A3_chr19_9954561_10015504	0/1	a0001	1745	99	8	24	45	8	13	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0002	1745	37	0	8	26	0	3	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0003	1745	19	2	1	12	2	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0004	1745	16	0	0	14	0	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0005	1745	15	1	3	7	0	4	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0006	1745	15	9	0	6	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0007	1745	15	8	5	1	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0008	1745	14	0	4	3	2	5	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0009	1745	13	1	6	5	0	1	copy fasta	COL5A3	chr19	9954561	10015504