Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTS2_chr5_179105853_179350461	0/0	a0005	1211	16	0	9	1	3	3	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0006	1211	15	0	3	6	1	5	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0007	1212	9	0	1	7	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0008	1212	6	0	1	4	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0009	1211	6	0	2	2	0	2	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0010	1211	5	5	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0011	1211	3	0	0	3	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0012	1211	3	1	1	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0013	1211	3	3	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0014	1212	2	0	0	1	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0015	1214	2	1	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0016	1211	2	0	0	2	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0017	1211	2	0	0	2	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0018	1211	2	0	2	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0019	1211	2	2	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0020	1215	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0021	1212	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0022	1212	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0023	1212	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0024	1212	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0025	1212	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0026	1212	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0027	1212	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0028	1212	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0029	1212	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0030	1214	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0031	1218	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0032	1211	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0033	1211	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0034	1211	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0035	1211	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	a0036	1211	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS3_chr4_72275969_72574221	0/1	a0001	1205	124	52	15	45	1	10	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	1/0	a0002	1205	45	7	14	16	1	6	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0003	1205	7	6	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0004	1205	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0005	1205	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0006	1205	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0007	1205	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0008	1205	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	a0009	1205	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS4_chr1_161179302_161204054	0/0	a0001	837	227	37	35	128	4	23	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	1/0	a0002	837	75	31	13	10	9	11	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/1	a0003	837	42	14	3	21	1	2	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0004	837	16	1	6	4	2	3	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0005	837	3	0	1	0	2	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0006	837	3	3	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0007	837	1	0	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0008	837	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0009	837	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054