JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL5A3_chr19_9954561_10015504	0/0	a0010	1745	12	1	3	6	0	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0011	1745	11	0	1	7	0	3	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0012	1745	11	2	1	7	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0013	1745	10	10	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0014	1745	9	8	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	1/0	a0015	1745	9	0	2	5	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0016	1745	8	0	0	8	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0017	1745	5	4	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0018	1745	5	0	3	0	1	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0019	1745	4	0	0	4	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0020	1745	4	1	3	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0021	1745	3	2	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0022	1745	3	1	1	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0023	1745	3	1	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0024	1745	3	3	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0025	1745	3	0	0	0	2	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0026	1745	3	3	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0027	1745	3	3	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0028	1745	3	0	1	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0029	1745	2	1	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0030	1745	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0031	1745	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0032	1745	2	1	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0033	1745	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0034	1745	2	2	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0035	1745	2	0	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0036	1745	2	0	0	2	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0037	1745	2	0	2	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0038	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0039	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0040	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0041	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0042	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0043	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0044	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0045	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0046	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0047	1745	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0048	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0049	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0050	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0051	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0052	1745	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0053	1745	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0054	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0055	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0056	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0057	1745	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0058	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0059	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504