JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL6A2_chr21_46093112_46137848	0/0	a0005	1019	4	0	0	4	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0006	1019	3	3	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0007	1019	3	3	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0008	1019	2	0	0	0	2	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0009	1019	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0010	1019	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0011	1019	1	0	0	0	1	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0012	1019	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0013	1019	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0014	1019	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A3_chr2_237319018_237419164	0/0	a0001	3177	62	14	12	24	2	10	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	1/0	a0002	3177	53	1	16	21	0	14	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0003	3177	34	14	6	11	0	3	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0004	3177	30	2	1	21	0	6	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0005	3177	19	9	5	1	1	3	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0006	3177	9	0	0	9	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/1	a0007	3176	7	1	2	2	1	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0008	3177	6	1	5	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0009	3177	6	5	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0010	3177	4	4	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0011	3177	4	4	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0012	3177	4	0	0	4	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0013	3177	4	4	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0014	3177	3	0	0	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0015	3177	3	0	0	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0016	3177	3	0	0	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0017	3177	3	0	3	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0018	3177	3	0	2	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0019	3177	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0020	3177	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0021	3177	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0022	3177	2	0	0	2	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0023	3177	2	0	2	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0024	3177	2	0	0	0	0	2	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0025	3177	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0026	3177	2	1	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0027	3177	2	0	0	1	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0028	3177	2	0	1	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0029	3177	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0030	3177	2	0	0	0	2	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0031	3177	1	0	0	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0032	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0033	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0034	123	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0035	3177	1	0	0	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0036	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0037	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0038	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0039	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0040	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164