JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL6A3_chr2_237319018_237419164	0/0	a0041	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0042	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0043	3177	1	0	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0044	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0045	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0046	3177	1	0	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0047	3177	1	0	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0048	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0049	3177	1	0	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0050	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0051	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0052	3177	1	0	1	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0053	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0054	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0055	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0056	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0057	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0058	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0059	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0060	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0061	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0062	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0063	3176	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0064	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0065	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0066	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0067	3177	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0068	3176	1	0	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0069	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0070	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	a0071	3177	1	1	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A5_chr3_130340672_130489846	0/0	a0001	2590	45	2	17	14	3	9	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0002	2614	20	0	0	17	0	3	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0003	2614	13	4	2	2	0	5	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/1	a0004	2590	12	1	1	7	1	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0005	2614	10	0	0	8	0	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0006	2590	10	6	3	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0007	2614	10	2	5	0	0	3	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0008	2590	9	0	3	4	0	2	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0009	2590	8	0	3	4	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0010	2614	8	0	3	5	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0011	2614	7	4	0	2	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0012	2614	7	0	0	6	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0013	2614	6	0	1	1	1	3	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0014	2614	6	0	0	6	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0015	2049	5	0	4	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0016	2614	4	4	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0017	2614	4	0	0	4	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0018	2614	4	4	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0019	2614	4	3	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846