JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL6A5_chr3_130340672_130489846	0/0	a0020	2614	3	2	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0021	2614	3	0	0	3	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0022	2590	3	0	0	3	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0023	2614	3	0	3	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0024	2614	3	3	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0025	1562	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0026	2614	2	0	1	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0027	2578	2	0	1	0	1	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0028	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0029	2614	2	1	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0030	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0031	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0032	2614	2	0	0	1	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0033	1183	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0034	2614	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0035	2590	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0036	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0037	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0038	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0039	2614	2	0	2	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0040	2614	2	2	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0041	2614	2	1	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0042	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0043	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0044	2614	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0045	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0046	2614	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0047	2590	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0048	1558	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0049	2271	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	1/0	a0050	2614	1	0	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0051	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0052	2614	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0053	2614	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0054	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0055	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0056	2614	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0057	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0058	2590	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0059	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0060	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0061	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0062	2614	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0063	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0064	2590	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0065	2590	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0066	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0067	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0068	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0069	2590	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846