JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL6A5_chr3_130340672_130489846	0/0	a0070	2614	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0071	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0072	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0073	2614	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0074	2590	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0075	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0076	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0077	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0078	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0079	2614	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0080	2590	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0081	2590	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0082	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0083	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0084	2590	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0085	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0086	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0087	2590	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0088	2614	1	0	0	1	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0089	2614	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0090	2590	1	1	0	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0091	2590	1	0	1	0	0	0	copy fasta	COL6A5	chr3	130340672	130489846
COL6A5_chr3_130340672_130489846	0/0	a0092	2614	1	0	0	0	0	1	copy fasta	COL6A5	chr3	130340672	130489846
COL6A6_chr3_130512177_130682042	0/1	a0001	2263	33	4	9	11	1	7	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0002	2263	31	4	13	11	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0003	2263	21	12	0	9	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	1/0	a0004	2263	20	3	2	12	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0005	2263	16	1	4	5	0	6	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0006	2263	15	7	2	2	0	4	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0007	2263	14	8	0	5	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0008	2263	13	7	6	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0009	2263	12	0	2	6	0	4	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0010	2263	10	6	0	3	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0011	2263	9	1	2	4	1	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0012	2263	8	0	2	3	0	3	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0013	2263	7	2	0	4	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0014	2263	4	3	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0015	2263	4	0	0	2	0	2	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0016	2263	3	0	0	3	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0017	2263	2	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0018	2263	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0019	2263	2	1	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0020	1433	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0021	2263	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0022	2263	2	0	0	2	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0023	2263	2	0	0	2	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0024	2263	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0025	2263	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0026	2263	2	2	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0027	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042