JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL6A6_chr3_130512177_130682042	0/0	a0028	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0029	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0030	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0031	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0032	355	1	0	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0033	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0034	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0035	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0036	1695	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0037	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0038	1466	1	0	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0039	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0040	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0041	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0042	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0043	2263	1	0	1	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0044	1479	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0045	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0046	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0047	2263	1	0	0	0	0	1	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0048	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0049	2263	1	1	0	0	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL6A6_chr3_130512177_130682042	0/0	a0050	2263	1	0	0	1	0	0	copy fasta	COL6A6	chr3	130512177	130682042
COL7A1_chr3_48559073_48600329	1/0	a0001	2944	198	58	50	66	7	16	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/1	a0002	2944	15	1	6	0	1	6	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0003	2944	3	0	3	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0004	2944	2	2	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0005	2944	2	1	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0006	2944	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0007	2944	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0008	2944	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0009	2944	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0010	2944	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0011	2944	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0012	2944	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0013	2944	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0014	2944	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0015	2944	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0016	2944	1	0	0	0	0	1	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0017	2944	1	0	0	0	0	1	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0018	2944	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0019	2944	1	1	0	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0020	2944	1	0	0	1	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL7A1_chr3_48559073_48600329	0/0	a0021	2944	1	0	1	0	0	0	copy fasta	COL7A1	chr3	48559073	48600329
COL8A1_chr3_99633594_99804217	1/1	a0001	744	261	74	52	84	12	37	copy fasta	COL8A1	chr3	99633594	99804217
COL8A1_chr3_99633594_99804217	0/0	a0002	744	1	0	0	0	0	1	copy fasta	COL8A1	chr3	99633594	99804217
COL8A2_chr1_36090239_36130222	1/1	a0001	703	312	86	52	134	7	31	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0002	703	49	1	5	41	0	2	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0003	703	19	1	6	11	0	1	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0004	703	2	0	0	2	0	0	copy fasta	COL8A2	chr1	36090239	36130222