JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL8A2_chr1_36090239_36130222	0/0	a0005	703	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0006	703	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0007	703	1	1	0	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0008	703	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0009	703	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0010	703	1	0	0	0	1	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0011	703	1	0	1	0	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL8A2_chr1_36090239_36130222	0/0	a0012	703	1	0	0	1	0	0	copy fasta	COL8A2	chr1	36090239	36130222
COL9A1_chr6_70211126_70308084	1/1	a0001	921	119	5	20	74	4	14	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0002	921	104	35	24	32	1	12	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0003	921	63	19	9	24	3	8	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0004	921	28	5	4	19	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0005	921	21	4	9	3	3	2	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0006	921	9	9	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0007	921	5	3	0	2	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0008	921	4	4	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0009	921	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0010	921	1	0	1	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0011	921	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0012	921	1	0	0	0	0	1	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0013	921	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0014	921	1	0	0	0	1	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0015	921	1	1	0	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0016	921	1	0	0	0	0	1	copy fasta	COL9A1	chr6	70211126	70308084
COL9A1_chr6_70211126_70308084	0/0	a0017	921	1	0	1	0	0	0	copy fasta	COL9A1	chr6	70211126	70308084
COL9A2_chr1_40295489_40322286	1/0	a0001	689	167	45	26	51	15	29	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0002	689	141	18	24	91	0	8	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0003	689	35	6	7	20	0	2	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0004	689	34	3	9	19	0	3	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0005	689	31	12	3	9	1	6	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0006	689	5	0	5	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/1	a0007	689	3	0	1	0	1	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0008	689	3	3	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0009	689	2	2	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0010	689	2	2	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0011	689	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0012	689	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0013	689	1	0	0	0	1	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0014	689	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0015	689	1	0	1	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0016	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0017	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0018	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0019	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0020	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0021	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0022	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0023	689	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0024	689	1	1	0	0	0	0	copy fasta	COL9A2	chr1	40295489	40322286
COL9A2_chr1_40295489_40322286	0/0	a0025	689	1	0	0	1	0	0	copy fasta	COL9A2	chr1	40295489	40322286