JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL9A3_chr20_62812050_62846159	1/0	a0001	684	308	39	57	164	9	38	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0002	684	29	20	8	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0003	684	17	16	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0004	684	13	5	4	4	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0005	684	7	0	6	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0006	684	6	4	2	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/1	a0007	684	4	0	2	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0008	684	4	0	0	4	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0009	684	3	3	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0010	684	2	1	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0011	684	2	1	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0012	684	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0013	684	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0014	684	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0015	684	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0016	684	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0017	684	1	0	0	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0018	166	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0019	684	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0020	684	1	0	0	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0021	684	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0022	684	1	0	0	0	1	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0023	684	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0024	684	1	0	0	1	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0025	684	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0026	684	1	0	0	0	0	1	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0027	684	1	0	1	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COL9A3_chr20_62812050_62846159	0/0	a0028	684	1	1	0	0	0	0	copy fasta	COL9A3	chr20	62812050	62846159
COLEC10_chr8_119062247_119113455	1/1	a0001	277	383	90	60	177	12	42	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	a0002	277	3	0	0	3	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	a0003	277	2	2	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC11_chr2_3590112_3649644	1/1	a0001	271	284	22	67	144	15	34	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	a0002	271	86	70	7	4	1	4	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	a0003	271	3	3	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	a0004	271	2	2	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	a0005	271	1	1	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	a0006	271	1	0	0	1	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	a0007	271	1	0	0	1	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC12_chr18_311737_505701	1/0	a0001	742	128	32	29	44	5	17	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/1	a0002	742	113	18	28	46	8	12	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0003	742	99	31	8	47	0	13	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0004	742	12	7	4	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0005	742	3	0	0	0	1	2	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0006	742	3	3	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0007	742	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0008	742	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0009	742	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0010	742	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0011	742	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	a0012	742	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701