Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTS4_chr1_161179302_161204054	0/0	a0010	837	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0011	837	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0012	837	1	0	0	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0013	837	1	0	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	a0014	837	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS5_chr21_26912922_26972088	0/0	a0001	930	173	44	30	68	6	25	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	1/0	a0002	930	93	2	14	65	3	8	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0003	930	40	3	5	28	2	2	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0004	930	33	17	9	1	3	3	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0005	930	12	0	0	12	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0006	930	10	9	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0007	930	7	6	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/1	a0008	930	6	0	1	1	0	3	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0009	930	5	5	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0010	930	5	0	3	0	0	2	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0011	930	3	0	1	1	1	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0012	930	2	0	1	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0013	930	2	0	1	0	1	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0014	930	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0015	930	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0016	930	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0017	930	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0018	930	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0019	930	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	a0020	930	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS6_chr5_65143738_65486920	1/1	a0001	1117	197	74	40	58	6	17	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	a0002	1117	2	2	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	a0003	1117	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	a0004	1117	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	a0005	1117	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	a0006	1117	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	a0007	1117	1	0	0	0	0	1	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS7_chr15_78754206_78816464	0/0	a0001	1686	66	10	11	35	2	8	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0002	1686	43	0	6	36	0	1	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0003	1686	33	5	12	4	3	9	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0004	1685	28	24	4	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/1	a0005	1686	24	2	8	4	3	6	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0006	1686	18	0	1	12	0	5	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0007	1686	16	4	0	12	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0008	1686	12	1	5	0	2	4	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0009	1685	11	0	2	9	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0010	1686	9	0	1	8	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0011	1686	9	0	0	9	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0012	1686	6	2	0	3	0	1	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0013	1686	6	0	0	6	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0014	1686	5	1	3	0	0	1	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0015	1686	5	0	0	5	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0016	1686	5	0	0	5	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0017	1686	4	1	0	3	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	1/0	a0018	1686	4	0	0	3	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464