JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COMMD6_chr13_75520214_75542841	0/0	a0002	85	1	1	0	0	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD6_chr13_75520214_75542841	0/0	a0003	85	1	0	0	1	0	0	copy fasta	COMMD6	chr13	75520214	75542841
COMMD7_chr20_32697699_32748467	1/1	a0001	200	399	90	76	171	16	44	copy fasta	COMMD7	chr20	32697699	32748467
COMMD7_chr20_32697699_32748467	0/0	a0002	190	1	0	0	1	0	0	copy fasta	COMMD7	chr20	32697699	32748467
COMMD8_chr4_47445787_47468702	1/1	a0001	183	370	74	59	179	14	42	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	a0002	183	16	15	1	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	a0003	183	6	6	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	a0004	183	1	0	0	1	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	a0005	183	1	0	0	0	0	1	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	a0006	183	1	1	0	0	0	0	copy fasta	COMMD8	chr4	47445787	47468702
COMMD8_chr4_47445787_47468702	0/0	a0007	183	1	0	0	0	0	1	copy fasta	COMMD8	chr4	47445787	47468702
COMMD9_chr11_36267292_36294424	1/1	a0001	198	443	92	79	212	16	42	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	a0002	198	3	3	0	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMMD9_chr11_36267292_36294424	0/0	a0003	198	2	1	1	0	0	0	copy fasta	COMMD9	chr11	36267292	36294424
COMP_chr19_18777773_18796305	1/1	a0001	757	366	73	76	150	18	47	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	a0002	757	22	18	4	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	a0003	757	5	4	1	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	a0004	757	2	0	1	0	0	1	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	a0005	757	2	2	0	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMP_chr19_18777773_18796305	0/0	a0006	757	1	1	0	0	0	0	copy fasta	COMP	chr19	18777773	18796305
COMTD1_chr10_75228641_75240957	1/1	a0001	262	398	89	71	184	16	36	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	a0002	262	5	0	0	5	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	a0003	262	3	0	0	3	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	a0004	262	1	1	0	0	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	a0005	262	1	0	0	1	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	a0006	262	1	0	1	0	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMTD1_chr10_75228641_75240957	0/0	a0007	262	1	0	0	1	0	0	copy fasta	COMTD1	chr10	75228641	75240957
COMT_chr22_19936772_19974975	1/1	a0001	271	263	71	39	120	11	20	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	a0002	271	147	22	34	64	5	22	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	a0003	271	12	0	3	9	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	a0004	271	3	0	0	3	0	0	copy fasta	COMT	chr22	19936772	19974975
COMT_chr22_19936772_19974975	0/0	a0005	271	1	1	0	0	0	0	copy fasta	COMT	chr22	19936772	19974975
COP1_chr1_175939831_176212286	1/1	a0001	731	287	81	64	100	6	34	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	a0002	731	5	3	2	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	a0003	731	4	0	0	4	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	a0004	731	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	a0005	731	1	0	0	1	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	a0006	731	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COP1_chr1_175939831_176212286	0/0	a0007	731	1	1	0	0	0	0	copy fasta	COP1	chr1	175939831	176212286
COPA_chr1_160283594_160348250	1/1	a0001	1224	335	73	72	144	12	32	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0002	1224	24	12	2	10	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0003	1224	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0004	1224	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0005	1224	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0006	1224	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0007	1224	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0008	1224	1	0	0	1	0	0	copy fasta	COPA	chr1	160283594	160348250
COPA_chr1_160283594_160348250	0/0	a0009	1224	1	1	0	0	0	0	copy fasta	COPA	chr1	160283594	160348250
COPB1_chr11_14452512_14504811	1/1	a0001	953	382	85	67	168	16	44	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	a0002	953	1	0	0	1	0	0	copy fasta	COPB1	chr11	14452512	14504811