JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COPB1_chr11_14452512_14504811	0/0	a0003	953	1	1	0	0	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	a0004	953	1	0	1	0	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB1_chr11_14452512_14504811	0/0	a0005	953	1	0	0	1	0	0	copy fasta	COPB1	chr11	14452512	14504811
COPB2_chr3_139352406_139394647	1/1	a0001	906	259	92	60	59	12	34	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	a0002	906	3	0	0	3	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPB2_chr3_139352406_139394647	0/0	a0003	906	2	0	0	2	0	0	copy fasta	COPB2	chr3	139352406	139394647
COPE_chr19_18894514_18924387	1/1	a0001	308	215	19	44	103	13	34	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	a0002	308	75	36	11	17	1	10	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	a0003	308	33	33	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	a0004	308	4	4	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	a0005	308	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	a0006	308	1	1	0	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPE_chr19_18894514_18924387	0/0	a0007	308	1	0	1	0	0	0	copy fasta	COPE	chr19	18894514	18924387
COPG1_chr3_129244606_129282773	1/1	a0001	874	307	83	65	112	10	35	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	a0002	874	14	3	5	1	2	3	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	a0003	874	2	2	0	0	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	a0004	874	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	a0005	874	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG1_chr3_129244606_129282773	0/0	a0006	874	1	0	0	1	0	0	copy fasta	COPG1	chr3	129244606	129282773
COPG2_chr7_130501238_130673748	1/1	a0001	871	313	87	59	108	13	44	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0002	871	3	2	1	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0003	871	3	1	0	2	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0004	871	1	0	0	0	1	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0005	871	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0006	871	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0007	871	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0008	871	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0009	871	1	0	0	1	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPG2_chr7_130501238_130673748	0/0	a0010	871	1	1	0	0	0	0	copy fasta	COPG2	chr7	130501238	130673748
COPRS_chr17_31846871_31864244	0/1	a0001	184	317	96	58	116	10	36	copy fasta	COPRS	chr17	31846871	31864244
COPRS_chr17_31846871_31864244	1/0	a0002	184	55	0	12	34	2	6	copy fasta	COPRS	chr17	31846871	31864244
COPS2_chr15_49117727_49160599	1/1	a0001	443	398	94	64	172	16	50	copy fasta	COPS2	chr15	49117727	49160599
COPS3_chr17_17241616_17286246	1/1	a0001	423	352	92	68	136	12	42	copy fasta	COPS3	chr17	17241616	17286246
COPS4_chr4_83030183_83080818	1/1	a0001	406	371	90	48	181	8	42	copy fasta	COPS4	chr4	83030183	83080818
COPS4_chr4_83030183_83080818	0/0	a0002	406	1	0	0	1	0	0	copy fasta	COPS4	chr4	83030183	83080818
COPS5_chr8_67038079_67067133	1/1	a0001	334	292	86	52	106	12	34	copy fasta	COPS5	chr8	67038079	67067133
COPS6_chr7_100083969_100097187	1/1	a0001	327	421	92	72	187	18	50	copy fasta	COPS6	chr7	100083969	100097187
COPS6_chr7_100083969_100097187	0/0	a0002	173	1	0	0	1	0	0	copy fasta	COPS6	chr7	100083969	100097187
COPS7A_chr12_6719046_6736865	1/1	a0001	275	473	95	86	226	18	46	copy fasta	COPS7A	chr12	6719046	6736865
COPS7A_chr12_6719046_6736865	0/0	a0002	275	1	1	0	0	0	0	copy fasta	COPS7A	chr12	6719046	6736865
COPS7B_chr2_231781445_231814253	1/1	a0001	264	347	95	66	122	18	44	copy fasta	COPS7B	chr2	231781445	231814253
COPS7B_chr2_231781445_231814253	0/0	a0002	264	1	1	0	0	0	0	copy fasta	COPS7B	chr2	231781445	231814253
COPS8_chr2_237080889_237105474	1/1	a0001	209	348	98	68	128	10	42	copy fasta	COPS8	chr2	237080889	237105474
COPS9_chr2_240125828_240141305	1/1	a0001	57	442	96	72	206	16	50	copy fasta	COPS9	chr2	240125828	240141305
COPZ1_chr12_54320131_54356846	1/1	a0001	177	367	92	66	157	16	34	copy fasta	COPZ1	chr12	54320131	54356846
COPZ1_chr12_54320131_54356846	0/0	a0002	177	1	0	0	1	0	0	copy fasta	COPZ1	chr12	54320131	54356846
COPZ2_chr17_48021167_48042797	1/1	a0001	210	364	78	69	161	14	40	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	a0002	210	29	18	6	0	4	1	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	a0003	210	1	0	1	0	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	a0004	210	1	0	0	0	0	1	copy fasta	COPZ2	chr17	48021167	48042797