JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COPZ2_chr17_48021167_48042797	0/0	a0005	210	1	0	0	1	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COQ10A_chr12_56261942_56275966	1/1	a0001	247	315	86	70	111	10	36	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	a0002	204	17	0	4	11	2	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10B_chr2_197448552_197480310	1/1	a0001	238	390	86	76	174	14	38	copy fasta	COQ10B	chr2	197448552	197480310
COQ2_chr4_83258824_83289798	0/0	a0001	371	217	45	43	102	4	23	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	1/1	a0002	371	115	49	23	24	6	11	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	a0003	371	8	0	2	6	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	a0004	371	1	0	1	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	a0005	371	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	a0006	371	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	a0007	371	1	0	1	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ3_chr6_99364401_99399195	0/0	a0001	369	214	38	63	79	5	29	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/1	a0002	369	135	24	16	75	7	12	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	a0003	369	59	7	5	39	6	2	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	1/0	a0004	369	19	15	3	0	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	a0005	369	4	4	0	0	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	a0006	369	1	0	1	0	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	a0007	369	1	0	0	1	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	a0008	369	1	0	0	0	0	1	copy fasta	COQ3	chr6	99364401	99399195
COQ4_chr9_128317839_128339072	0/1	a0001	265	352	67	48	178	15	43	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0002	265	11	9	1	0	1	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0003	265	4	4	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	1/0	a0004	265	2	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0005	265	1	0	0	0	0	1	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0006	265	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0007	265	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0008	265	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	a0009	265	1	0	1	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ5_chr12_120498279_120534158	1/1	a0001	327	322	65	58	145	14	38	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	a0002	327	61	32	11	12	2	4	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	a0003	327	2	0	0	2	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	a0004	327	1	0	0	1	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	a0005	327	1	1	0	0	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	a0006	327	1	0	1	0	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ6_chr14_73945302_73968670	1/1	a0001	468	212	48	38	101	8	15	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0002	468	139	24	31	57	7	20	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0003	468	92	15	4	61	1	11	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0004	468	5	4	1	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0005	468	3	3	0	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0006	468	2	2	0	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0007	468	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0008	225	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	a0009	468	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ7_chr16_19062614_19085095	0/0	a0001	217	190	17	28	113	6	26	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	1/1	a0002	217	164	74	26	37	4	21	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	a0003	217	10	1	6	3	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	a0004	217	4	0	0	4	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	a0005	217	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	a0006	217	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	a0007	217	1	0	0	0	0	1	copy fasta	COQ7	chr16	19062614	19085095