JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COQ7_chr16_19062614_19085095	0/0	a0008	217	1	0	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ8A_chr1_226935294_226992544	1/1	a0001	647	377	71	78	165	17	44	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0002	647	23	20	2	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0003	647	7	0	0	6	0	1	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0004	647	1	0	0	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0005	647	1	0	0	0	1	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0006	647	1	0	0	0	0	1	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0007	647	1	0	0	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	a0008	647	1	1	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8B_chr19_40686530_40721886	1/1	a0001	544	218	62	29	97	7	21	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0002	544	177	31	42	78	8	18	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0003	544	3	0	2	0	1	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0004	544	3	0	0	3	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0005	544	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0006	79	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0007	544	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0008	544	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0009	544	1	0	1	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0010	544	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0011	544	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0012	544	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	a0013	544	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ9_chr16_57442479_57466270	1/1	a0001	318	393	87	66	184	14	40	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0002	318	4	1	0	3	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0003	318	2	0	0	0	0	2	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0004	318	1	1	0	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0005	318	1	0	0	0	0	1	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0006	318	1	0	0	1	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0007	318	1	0	0	0	0	1	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	a0008	318	1	1	0	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
CORIN_chr4_47589001_47843067	0/1	a0001	1042	160	52	27	56	7	17	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0002	1042	70	26	10	29	2	3	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	1/0	a0003	1042	10	0	6	1	1	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0004	1042	7	0	1	0	2	4	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0005	1042	3	3	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0006	1042	3	3	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0007	1042	2	2	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0008	1042	2	1	1	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0009	1042	1	0	1	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0010	1042	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0011	1042	1	0	0	1	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0012	1042	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0013	1042	1	0	0	1	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0014	1042	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	a0015	1042	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORO1A_chr16_30178602_30194076	1/1	a0001	461	339	79	66	144	14	34	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	a0002	461	2	2	0	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	a0003	461	1	1	0	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1B_chr11_67430510_67448476	1/1	a0001	489	343	92	62	140	13	34	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0002	489	3	0	0	3	0	0	copy fasta	CORO1B	chr11	67430510	67448476