JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CORO1B_chr11_67430510_67448476	0/0	a0003	489	2	0	0	2	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0004	489	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0005	489	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0006	489	1	0	0	0	1	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0007	351	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0008	489	1	0	0	0	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	a0009	489	1	0	0	0	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1C_chr12_108640109_108736518	1/1	a0001	474	320	76	54	136	14	38	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	a0002	474	2	0	0	2	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	a0003	474	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	a0004	474	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	a0005	474	1	0	0	1	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	a0006	474	1	0	0	1	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO2A_chr9_98115975_98197637	1/1	a0001	525	339	84	60	140	10	43	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	a0002	525	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	a0003	525	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	a0004	525	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2B_chr15_68573993_68732806	1/1	a0001	480	253	84	50	71	10	36	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	a0002	480	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	a0003	480	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	a0004	480	1	0	0	1	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO6_chr17_29609762_29627912	1/1	a0001	472	363	92	77	132	16	44	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	a0002	472	3	0	1	0	2	0	copy fasta	CORO6	chr17	29609762	29627912
CORO7_chr16_4349542_4421596	0/1	a0001	925	133	53	26	34	5	14	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0002	925	127	14	32	54	7	20	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0003	925	17	17	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0004	925	4	4	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0005	925	2	2	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0006	925	1	0	0	1	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0007	925	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0008	925	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0009	925	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0010	925	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0011	925	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0012	925	1	0	0	1	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0013	925	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0014	925	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0015	925	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0016	925	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0017	925	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0018	925	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	a0019	925	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORT_chr1_10445031_10456998	1/1	a0001	105	427	98	78	183	16	50	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	a0002	105	1	0	0	1	0	0	copy fasta	CORT	chr1	10445031	10456998
COTL1_chr16_84560596_84623078	1/1	a0001	142	438	98	72	204	16	46	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	a0002	142	2	0	0	2	0	0	copy fasta	COTL1	chr16	84560596	84623078
COX10_chr17_14064504_14213677	1/0	a0001	443	144	39	30	53	4	17	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0002	443	118	30	24	49	7	8	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/1	a0003	443	40	1	10	23	1	4	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0004	443	7	6	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677