JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COX10_chr17_14064504_14213677	0/0	a0005	443	4	0	0	4	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0006	443	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0007	443	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0008	443	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0009	443	1	0	0	1	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0010	443	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0011	443	1	0	0	0	0	1	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	a0012	443	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX11_chr17_54955422_54973654	1/1	a0001	276	435	93	72	206	12	50	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	a0002	276	1	1	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX14_chr12_50107236_50125453	1/1	a0001	57	418	96	80	188	12	40	copy fasta	COX14	chr12	50107236	50125453
COX15_chr10_99705868_99737127	1/1	a0001	410	418	91	80	187	14	44	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	a0002	410	2	0	0	2	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	a0003	410	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	a0004	410	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX16_chr14_70320081_70364683	1/1	a0001	106	375	80	68	171	8	46	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	a0002	106	1	0	0	1	0	0	copy fasta	COX16	chr14	70320081	70364683
COX17_chr3_119664532_119682406	1/1	a0001	63	420	86	70	202	14	46	copy fasta	COX17	chr3	119664532	119682406
COX18_chr4_73047362_73074716	1/1	a0001	334	381	82	71	174	14	38	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	a0002	334	2	2	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	a0003	334	1	0	1	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX19_chr7_959852_980549	1/1	a0001	90	430	96	78	190	16	48	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	a0002	90	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	a0003	90	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX20_chr1_244830658_244850057	1/1	a0001	118	291	82	59	103	9	36	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	a0002	118	3	0	0	3	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	a0003	118	2	0	1	0	1	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	a0004	118	1	1	0	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	a0005	118	1	1	0	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX4I1_chr16_85794695_85812068	1/1	a0001	169	347	89	59	149	14	34	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	a0002	169	85	9	7	61	2	6	copy fasta	COX4I1	chr16	85794695	85812068
COX4I2_chr20_31632912_31650006	1/1	a0001	171	278	83	58	82	13	40	copy fasta	COX4I2	chr20	31632912	31650006
COX4I2_chr20_31632912_31650006	0/0	a0002	171	22	11	8	0	1	2	copy fasta	COX4I2	chr20	31632912	31650006
COX5A_chr15_74914791_74943073	1/1	a0001	150	426	90	78	197	16	43	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	a0002	150	1	0	0	0	0	1	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	a0003	150	1	0	0	1	0	0	copy fasta	COX5A	chr15	74914791	74943073
COX5B_chr2_97641062_97653383	1/1	a0001	129	345	96	56	134	14	43	copy fasta	COX5B	chr2	97641062	97653383
COX5B_chr2_97641062_97653383	0/0	a0002	129	1	0	0	0	0	1	copy fasta	COX5B	chr2	97641062	97653383
COX6A1_chr12_120433113_120445730	1/1	a0001	109	426	98	80	190	14	42	copy fasta	COX6A1	chr12	120433113	120445730
COX6A2_chr16_31422731_31433360	1/1	a0001	97	412	92	66	196	16	40	copy fasta	COX6A2	chr16	31422731	31433360
COX6B1_chr19_35643323_35663782	1/1	a0001	86	440	98	80	200	14	46	copy fasta	COX6B1	chr19	35643323	35663782
COX6B2_chr19_55344704_55359719	1/1	a0001	88	385	89	68	166	14	46	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	a0002	55	3	3	0	0	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	a0003	88	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	a0004	88	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6C_chr8_99872865_99898707	1/1	a0001	75	356	90	68	134	18	44	copy fasta	COX6C	chr8	99872865	99898707
COX7A1_chr19_36145922_36157447	1/1	a0001	79	466	100	84	212	18	50	copy fasta	COX7A1	chr19	36145922	36157447
COX7A2L_chr2_42344338_42366217	1/1	a0001	114	392	91	68	169	16	46	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	a0002	114	7	0	0	7	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	a0003	114	5	0	0	5	0	0	copy fasta	COX7A2L	chr2	42344338	42366217