JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COX7A2L_chr2_42344338_42366217	0/0	a0004	114	1	1	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	a0005	114	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2_chr6_75232787_75248801	1/1	a0001	83	380	86	60	188	12	32	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	a0002	83	2	0	0	2	0	0	copy fasta	COX7A2	chr6	75232787	75248801
COX7B2_chr4_46729827_46914245	0/0	a0000	0	1	0	0	1	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	1/1	a0001	81	298	73	52	131	10	30	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	a0002	81	1	1	0	0	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B_chrX_77894468_77912376	1/1	a0001	80	290	68	46	129	11	34	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	a0002	80	4	4	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7C_chr5_86612941_86625962	1/1	a0001	63	412	96	72	178	16	48	copy fasta	COX7C	chr5	86612941	86625962
COX8A_chr11_63969620_63981543	1/1	a0001	69	335	89	68	124	12	40	copy fasta	COX8A	chr11	63969620	63981543
COX8A_chr11_63969620_63981543	0/0	a0002	69	1	1	0	0	0	0	copy fasta	COX8A	chr11	63969620	63981543
COX8C_chr14_93342182_93353356	0/1	a0001	72	410	84	71	202	16	36	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	a0002	72	13	11	2	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	a0003	72	1	0	0	1	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	a0004	72	1	0	0	1	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	a0005	35	1	1	0	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	a0006	72	1	0	1	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
CPA1_chr7_130375494_130393108	1/1	a0001	419	410	88	71	194	12	43	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0002	419	10	0	0	10	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0003	419	9	1	1	0	4	3	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0004	419	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0005	419	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0006	419	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0007	419	1	0	0	1	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	a0008	419	1	0	0	1	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA2_chr7_130261863_130294798	0/0	a0000	0	1	0	1	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	1/1	a0001	419	381	77	68	170	16	48	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	a0002	419	6	0	0	6	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	a0003	419	6	6	0	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	a0004	419	5	5	0	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	a0005	419	1	0	1	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA3_chr3_148860296_148902203	0/1	a0001	417	335	69	63	151	10	41	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	a0002	417	29	25	4	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	1/0	a0003	417	26	0	5	11	4	5	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	a0004	417	4	4	0	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	a0005	417	2	0	2	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	a0006	417	2	0	0	2	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	a0007	417	1	0	0	0	1	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	a0008	417	1	0	0	0	1	0	copy fasta	CPA3	chr3	148860296	148902203
CPA4_chr7_130288161_130329180	1/1	a0001	421	230	57	38	100	6	27	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0002	421	125	19	27	62	5	12	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0003	421	26	11	8	2	2	3	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0004	421	8	0	1	4	3	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0005	421	5	0	0	5	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0006	421	4	4	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0007	421	2	2	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0008	421	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	a0009	421	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA5_chr7_130339816_130373730	1/0	a0001	436	337	50	53	183	10	40	copy fasta	CPA5	chr7	130339816	130373730