JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPA5_chr7_130339816_130373730	0/1	a0002	436	39	16	8	1	6	7	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0003	436	21	15	5	0	0	1	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0004	436	5	1	1	3	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0005	436	3	0	2	1	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0006	436	2	0	2	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0007	436	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0008	436	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0009	436	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0010	436	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	a0011	436	1	0	1	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA6_chr8_67417038_67751360	1/1	a0001	437	95	45	16	25	0	7	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0002	437	34	20	2	8	1	3	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0003	437	4	1	2	0	1	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0004	437	3	0	0	3	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0005	437	3	1	0	0	0	2	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0006	437	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0007	437	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0008	437	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0009	437	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	a0010	437	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPAMD8_chr19_16887951_17031810	0/0	a0001	1885	20	2	5	8	2	3	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0002	1885	14	11	1	1	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0003	1885	12	0	2	7	0	3	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0004	1885	10	1	0	8	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0005	1885	9	0	3	4	0	2	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/1	a0006	1885	9	0	6	0	1	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0007	1885	7	5	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0008	1885	6	0	3	2	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0009	1885	6	0	2	3	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0010	1885	6	1	4	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0011	1885	6	0	2	3	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0012	1885	5	0	2	1	0	2	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0013	1885	4	0	1	2	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0014	1885	4	0	0	3	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0015	1885	4	0	2	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0016	1885	4	4	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0017	1885	3	1	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	1/0	a0018	1885	3	0	1	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0019	1885	3	0	1	1	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0020	1885	3	3	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0021	1885	3	1	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0022	1885	3	0	0	1	0	2	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0023	1885	3	1	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0024	1885	3	0	0	3	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0025	1885	3	0	2	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0026	1885	3	0	0	2	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0027	1885	3	0	1	0	1	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0028	1885	3	3	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0029	1885	3	1	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0030	1885	2	2	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810