JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
CPAMD8_chr19_16887951_17031810	0/0	a0031	1885	2	0	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0032	1885	2	0	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0033	1885	2	0	1	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0034	1885	2	1	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0035	1885	2	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0036	1885	2	0	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0037	1885	2	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0038	1885	2	0	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0039	1885	2	0	1	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0040	1885	2	0	1	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0041	1885	2	0	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0042	1885	2	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0043	1885	2	0	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0044	1885	2	0	1	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0045	1885	2	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0046	1885	2	0	1	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0047	1885	2	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0048	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0049	1885	1	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0050	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0051	1885	1	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0052	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0053	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0054	1885	1	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0055	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0056	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0057	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0058	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0059	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0060	1885	1	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0061	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0062	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0063	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0064	1885	1	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0065	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0066	1885	1	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0067	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0068	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0069	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0070	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0071	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0072	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0073	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0074	1885	1	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0075	1885	1	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0076	1885	1	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0077	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0078	1885	1	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0079	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	a0080	1885	1	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810