JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPB1_chr3_148822811_148865187	0/0	a0007	417	1	1	0	0	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	a0008	417	1	0	0	1	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB2_chr13_46048186_46110033	0/0	a0001	423	156	39	29	71	3	14	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	a0002	423	103	31	20	45	2	5	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	1/1	a0003	423	66	8	16	25	4	11	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	a0004	323	3	0	3	0	0	0	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	a0005	423	1	0	0	1	0	0	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	a0006	423	1	0	0	0	1	0	copy fasta	CPB2	chr13	46048186	46110033
CPD_chr17_30373927_30474989	1/1	a0001	1380	279	75	61	92	12	37	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0002	1380	7	6	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0003	1380	2	0	0	2	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0004	1380	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0005	1380	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0006	1380	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0007	1380	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0008	1380	1	0	0	0	0	1	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0009	1380	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0010	1380	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	a0011	1380	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPEB1_chr15_82538201_82652363	1/1	a0001	588	178	49	41	66	9	11	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	a0002	588	173	41	18	84	8	22	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	a0003	588	3	0	1	0	1	1	copy fasta	CPEB1	chr15	82538201	82652363
CPEB2_chr4_14997481_15075151	0/0	a0001	1034	112	20	24	52	6	10	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0002	1037	53	23	3	23	0	4	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	1/1	a0003	1034	34	7	7	4	3	11	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0004	1034	14	0	3	7	0	4	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0005	1035	13	4	1	5	1	2	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0006	1034	12	12	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0007	1034	8	8	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0008	1034	7	0	3	0	0	4	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0009	1034	7	0	5	0	2	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0010	1034	7	7	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0011	1029	5	0	1	4	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0012	1038	5	0	0	5	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0013	1035	2	1	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0014	1035	2	2	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0015	1034	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0016	1034	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0017	1034	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0018	1034	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0019	1035	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0020	1037	1	0	0	0	0	1	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	a0021	1037	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB3_chr10_92041692_92296078	1/1	a0001	698	275	77	51	95	10	40	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	a0002	698	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	a0003	698	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	a0004	698	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB4_chr5_173883349_173966980	1/1	a0001	729	370	86	72	160	10	40	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	a0002	729	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	a0003	729	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980