JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPED1_chr7_120983711_121302442	1/0	a0001	1026	81	51	18	5	3	3	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/1	a0002	1026	45	11	15	14	1	3	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	a0003	1026	7	7	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	a0004	1026	3	2	1	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	a0005	1026	2	2	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	a0006	1026	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	a0007	1026	1	0	0	1	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPE_chr4_165374008_165503547	1/1	a0001	476	332	92	52	142	6	38	copy fasta	CPE	chr4	165374008	165503547
CPHXL2_chr16_75655227_75682009	1/1	a0001	400	375	81	71	167	15	39	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0002	400	7	0	0	6	0	1	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0003	400	5	5	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0004	400	1	0	0	0	1	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0005	400	1	0	0	1	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0006	293	1	1	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0007	400	1	1	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	a0008	400	1	0	1	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL_chr16_75709131_75731490	1/1	a0001	405	382	84	71	163	18	44	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	a0002	405	2	0	2	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	a0003	405	1	0	1	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	a0004	405	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	a0005	405	1	0	0	1	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	a0006	405	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPLANE1_chr5_37101235_37254376	1/1	a0001	3251	156	18	35	84	7	10	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0002	3251	19	4	8	2	2	3	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0003	3251	16	13	3	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0004	3251	13	11	1	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0005	3251	8	0	0	8	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0006	3251	8	7	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0007	3251	7	7	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0008	3251	7	7	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0009	3251	6	6	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0010	3251	4	0	1	0	3	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0011	3251	3	0	0	3	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0012	3251	2	0	0	0	0	2	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0013	3251	2	0	0	2	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0014	3251	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0015	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0016	3251	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0017	3251	1	0	0	0	0	1	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0018	3251	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0019	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0020	3251	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0021	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0022	3251	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0023	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0024	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0025	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0026	3251	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0027	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0028	3251	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376