JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPLANE1_chr5_37101235_37254376	0/0	a0029	3251	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	a0030	3251	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE2_chr1_16226692_16242183	1/1	a0001	258	378	91	78	148	16	43	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	a0002	258	1	0	0	0	0	1	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	a0003	258	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLX1_chr4_779957_831129	1/1	a0001	134	415	85	84	178	18	48	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	a0002	134	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX2_chr5_175866578_175889021	1/1	a0001	134	374	90	71	157	16	38	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	a0002	134	3	0	0	3	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	a0003	77	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX3_chr15_74821627_74836802	1/1	a0001	158	441	90	69	218	18	44	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	a0002	158	1	0	1	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX4_chr18_59290402_59323649	1/1	a0001	160	417	88	68	199	16	44	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	a0002	160	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPM_chr12_68846175_68938171	1/1	a0001	443	278	37	53	139	12	35	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	a0002	443	56	51	2	1	0	2	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	a0003	443	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	a0004	443	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	a0005	443	1	0	0	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	a0006	443	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	a0007	443	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPN1_chr10_100037193_100086869	1/1	a0001	458	328	94	65	122	10	35	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	a0002	458	16	0	6	9	0	1	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	a0003	458	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	a0004	458	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	a0005	458	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	a0006	458	1	0	1	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN2_chr3_194334768_194356328	0/0	a0001	545	115	16	19	57	6	17	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/1	a0002	545	114	5	20	75	2	11	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0003	545	89	37	21	24	3	4	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	1/0	a0004	545	75	8	13	35	3	15	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0005	545	17	15	1	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0006	545	12	12	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0007	545	4	4	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0008	545	2	0	2	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0009	545	2	0	0	0	1	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0010	545	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0011	545	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0012	545	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0013	545	1	0	0	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0014	545	1	0	0	0	1	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0015	545	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0016	545	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0017	545	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0018	545	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	a0019	545	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPNE1_chr20_35621044_35669900	1/1	a0001	537	160	39	31	66	5	17	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0002	421	46	8	12	20	2	4	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0003	537	31	24	5	0	1	1	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0004	537	24	3	1	6	2	12	copy fasta	CPNE1	chr20	35621044	35669900