JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPNE1_chr20_35621044_35669900	0/0	a0005	537	6	6	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0006	537	2	2	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0007	537	1	0	1	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0008	537	1	1	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	a0009	537	1	1	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE2_chr16_57087583_57153369	1/1	a0001	548	358	91	58	151	14	42	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	a0002	548	3	3	0	0	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	a0003	548	1	0	0	1	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE3_chr8_86509435_86566498	1/1	a0001	537	261	41	47	139	6	26	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0002	537	38	16	9	3	2	8	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0003	537	21	19	2	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0004	537	10	9	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0005	537	3	3	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0006	537	2	2	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0007	173	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0008	537	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0009	348	1	0	0	1	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0010	537	1	0	0	1	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	a0011	537	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE4_chr3_131528569_132040014	1/1	a0001	557	94	48	12	20	0	12	copy fasta	CPNE4	chr3	131528569	132040014
CPNE5_chr6_36735775_36844444	1/1	a0001	593	374	94	62	158	18	40	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	a0002	593	3	0	0	3	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	a0003	593	2	0	0	2	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	a0004	593	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE6_chr14_24066562_24083087	1/1	a0001	557	436	96	74	208	16	40	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	a0002	557	2	0	0	2	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	a0003	557	1	0	0	0	0	1	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	a0004	557	1	0	0	0	0	1	copy fasta	CPNE6	chr14	24066562	24083087
CPNE7_chr16_89570758_89602246	1/1	a0001	558	277	88	56	80	13	38	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0002	558	47	1	11	32	1	2	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0003	558	14	0	0	14	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0004	558	3	1	0	0	2	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0005	558	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0006	558	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0007	558	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0008	558	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0009	259	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0010	558	1	0	1	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	a0011	558	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE8_chr12_38647203_38910591	1/1	a0001	564	341	89	68	142	14	26	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	a0002	564	1	1	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE9_chr3_9698833_9734908	1/1	a0001	553	438	96	80	198	18	44	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	a0002	553	1	0	0	1	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	a0003	553	1	0	0	1	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPOX_chr3_98574446_98598611	1/0	a0001	454	266	31	52	131	15	36	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/1	a0002	454	116	47	15	46	2	5	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	a0003	454	38	1	17	15	1	4	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	a0004	454	16	13	1	1	0	1	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	a0005	454	6	5	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	a0006	454	3	0	0	3	0	0	copy fasta	CPOX	chr3	98574446	98598611