JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPOX_chr3_98574446_98598611	0/0	a0007	454	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	a0008	454	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	a0009	454	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPO_chr2_206934518_206974474	1/1	a0001	374	231	25	47	124	7	26	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0002	374	155	43	20	69	9	14	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0003	374	24	23	1	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0004	374	3	2	1	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0005	374	2	0	2	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0006	374	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0007	374	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0008	58	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0009	374	1	0	0	1	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0010	298	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0011	374	1	0	1	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	a0012	374	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPPED1_chr16_12654799_12808887	0/1	a0001	314	93	12	21	28	11	20	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0002	314	85	36	9	32	0	8	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	1/0	a0003	314	52	9	6	29	1	6	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0004	314	42	16	8	18	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0005	314	4	0	0	4	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0006	314	2	0	0	2	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0007	314	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0008	314	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0009	314	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0010	314	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0011	172	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0012	314	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0013	314	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0014	314	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0015	314	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0016	314	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0017	314	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	a0018	314	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPQ_chr8_96640242_97148501	1/1	a0001	472	109	41	19	34	5	8	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0002	472	8	8	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0003	472	2	2	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0004	472	2	2	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0005	472	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0006	472	1	0	1	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0007	472	1	0	0	0	1	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0008	472	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	a0009	472	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPS1_chr2_210551599_210684107	0/1	a0001	1500	127	32	20	58	6	10	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	1/0	a0002	1500	96	17	17	51	2	8	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0003	1500	60	20	11	22	0	7	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0004	1500	34	9	10	6	0	9	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0005	1500	3	3	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0006	1500	3	3	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0007	1500	2	2	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0008	1500	2	0	2	0	0	0	copy fasta	CPS1	chr2	210551599	210684107